If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 44 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ), 'gf_id' => 'HOM05D000978', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000978' ), 'data_identifier' => 'HOM05D000978', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000978', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p20760' => 'bna', 'A04p24100' => 'bna', 'A05p14490' => 'bna', 'A07p18070' => 'bna', 'A09p14450' => 'bna', 'A09p14500' => 'bna', 'Aa31LG2G1640' => 'aar', 'Aa31LG5G5670' => 'aar', 'Aa31LG5G8650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.509' => 'aag', 'Actinidia00052' => 'ach', 'Actinidia09561' => 'ach', 'Actinidia11282' => 'ach', 'Actinidia11283' => 'ach', 'Actinidia12888' => 'ach', 'Actinidia21196' => 'ach', 'Actinidia21197' => 'ach', 'Actinidia22194' => 'ach', 'Actinidia24252' => 'ach', 'Actinidia26492' => 'ach', 'Actinidia27296' => 'ach', 'Actinidia33297' => 'ach', 'Actinidia35482' => 'ach', 'Actinidia37060' => 'ach', 'Ah.02g111870' => 'amhyb', 'Ah.11g049800' => 'amhyb', 'Ah.12g053030' => 'amhyb', 'Ah.13g076410' => 'amhyb', 'Ah.15g098760' => 'amhyb', 'AL1G16100' => 'aly', 'AL2G10130' => 'aly', 'AL4G21140' => 'aly', 'AL4G26510' => 'aly', 'Aqoxy1G00654' => 'aox', 'Aqoxy1G00839' => 'aox', 'Aqoxy2G03627' => 'aox', 'Aqoxy5G04314' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14I9QE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H01Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65IBAG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A34414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUS6JB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6BNSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG6521' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FATM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1N8MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZVB8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MGXG52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB6M9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S75ETS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TV0R1G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UZ1SEH' => 'arhy', 'AT1G06150' => 'ath', 'AT1G64625' => 'ath', 'AT2G27230' => 'ath', 'AT2G31280' => 'ath', 'AT5G24352' => 'ath', 'ATR0559G350' => 'atr', 'ATR0757G126' => 'atr', 'ATR0772G145' => 'atr', 'Atru.chr3.3115' => 'acertr', 'Atru.chr3.3116' => 'acertr', 'Atru.chr5.1644' => 'acertr', 'Atru.chr8.2044' => 'acertr', 'Atru.chr8.2051' => 'acertr', 'Atru.chr9.1912' => 'acertr', 'Atru.chr9.1913' => 'acertr', 'AUR62001552' => 'cqu', 'AUR62007032' => 'cqu', 'AUR62011893' => 'cqu', 'AUR62019896' => 'cqu', 'AUR62020231' => 'cqu', 'AUR62024734' => 'cqu', 'AUR62032125' => 'cqu', 'AUR62039677' => 'cqu', 'AUR62044349' => 'cqu', 'BcaB01g01555' => 'bca', 'BcaB01g03059' => 'bca', 'BcaB02g10078' => 'bca', 'BcaB02g10367' => 'bca', 'BcaB06g28132' => 'bca', 'BcaB06g28443' => 'bca', 'BcaB06g28524' => 'bca', 'BcaB07g31483' => 'bca', 'BcaB07g31484' => 'bca', 'BcaB07g31492' => 'bca', 'BcaC02g08262' => 'bca', 'BcaC02g10864' => 'bca', 'BcaC02g11200' => 'bca', 'BcaC04g22595' => 'bca', 'BcaC04g22602' => 'bca', 'BcaC09g50569' => 'bca', 'BolC4t23465H' => 'bol', 'BolC4t23932H' => 'bol', 'BolC4t27186H' => 'bol', 'BolC4t27572H' => 'bol', 'BolC9t54641H' => 'bol', 'BolC9t54647H' => 'bol', 'BraA04t17649Z' => 'bra', 'BraA04t17930Z' => 'bra', 'BraA05t20380Z' => 'bra', 'BraA07t29526Z' => 'bra', 'BraA09t37098Z' => 'bra', 'C04p19320' => 'bna', 'C04p24330' => 'bna', 'C04p56590' => 'bna', 'C04p60810' => 'bna', 'C09p17410' => 'bna', 'C09p17490' => 'bna', 'CAN.G1726.1' => 'can', 'CAN.G554.6' => 'can', 'CAN.G567.71' => 'can', 'CAN.G620.3' => 'can', 'CAN.G689.20' => 'can', 'CANSAT01G0248' => 'cansat', 'CANSAT21G0866' => 'cansat', 'CANSAT35G1240' => 'cansat', 'CANSAT54G1931' => 'cansat', 'CARHR005660' => 'chi', 'CARHR046290' => 'chi', 'CARHR119730' => 'chi', 'CARHR124870' => 'chi', 'Carub.0001s0550' => 'cru', 'Carub.0002s0011' => 'cru', 'Carub.0004s0783' => 'cru', 'Carub.0004s1257' => 'cru', 'Ca_01633_v3' => 'car', 'Ca_08663_v3' => 'car', 'Ca_09691_v3' => 'car', 'Ca_09934_v3' => 'car', 'Ca_09943_v3' => 'car', 'Ca_19467_v3' => 'car', 'Ca_21983_v3' => 'car', 'Cc00_g23290' => 'ccan', 'Cc01_g07640' => 'ccan', 'Cc01_g18480' => 'ccan', 'Cc06_g02250' => 'ccan', 'CDE03G0098' => 'cde', 'CDE04G1312' => 'cde', 'CDE04G3148' => 'cde', 'CDE08G1437' => 'cde', 'Cfa010170' => 'cfa', 'Cfa011948' => 'cfa', 'Cfa017331' => 'cfa', 'Ciclev10011164m.g' => 'ccl', 'Ciclev10018834m.g' => 'ccl', 'Ciclev10018993m.g' => 'ccl', 'Ciclev10029797m.g' => 'ccl', 'Ciclev10029996m.g' => 'ccl', 'Ciclev10030153m.g' => 'ccl', 'CiPaw.03G261800' => 'cil', 'CiPaw.04G185300' => 'cil', 'CiPaw.09G197800' => 'cil', 'CiPaw.10G147900' => 'cil', 'CiPaw.11G114600' => 'cil', 'CiPaw.12G079000' => 'cil', 'CiPaw.13G129400' => 'cil', 'CiPaw.14G094300' => 'cil', 'ClCG03G012160' => 'cla', 'ClCG09G007670' => 'cla', 'ClCG10G000870' => 'cla', 'ClCG10G021420' => 'cla', 'COL.COLO4_05164' => 'col', 'COL.COLO4_10770' => 'col', 'COL.COLO4_14745' => 'col', 'COL.COLO4_23492' => 'col', 'COL.COLO4_28035' => 'col', 'COL.COLO4_37849' => 'col', 'Cpa.g.sc103.8' => 'cpa', 'Cpa.g.sc169.3' => 'cpa', 'Cpa.g.sc175.4' => 'cpa', 'Cpa.g.sc50.35' => 'cpa', 'Cpa.g.sc50.37' => 'cpa', 'CsaV3_1G043790' => 'csa', 'CsaV3_3G000950' => 'csa', 'CsaV3_3G034600' => 'csa', 'CsaV3_7G027460' => 'csa', 'CSS0008992' => 'camsi', 'CSS0013678' => 'camsi', 'CSS0018396' => 'camsi', 'CSS0018886' => 'camsi', 'CSS0022062' => 'camsi', 'CSS0030239' => 'camsi', 'CSS0038620' => 'camsi', 'CSS0042975' => 'camsi', 'CSS0047767' => 'camsi', 'DCAR_001795' => 'dca', 'DCAR_006528' => 'dca', 'DCAR_012126' => 'dca', 'DCAR_012241' => 'dca', 'DCAR_018203' => 'dca', 'Dinv06547' => 'din', 'Dinv07114' => 'din', 'Dinv09383' => 'din', 'Dinv12203' => 'din', 'Dinv18835' => 'din', 'Dinv34607' => 'din', 'Dinv35563' => 'din', 'Dinv37136' => 'din', 'Duzib068G0432' => 'dzi', 'Duzib084G0123' => 'dzi', 'Duzib093G1588' => 'dzi', 'Duzib128G0829' => 'dzi', 'Duzib133G0277' => 'dzi', 'Duzib133G1328' => 'dzi', 'Duzib138G0712' => 'dzi', 'Duzib150G0471' => 'dzi', 'Duzib168G0251' => 'dzi', 'Duzib170G0301' => 'dzi', 'Duzib205G2029' => 'dzi', 'ECA236G3915' => 'eca', 'ECA238G1700' => 'eca', 'ECA240G3513' => 'eca', 'ECA246G2184' => 'eca', 'ECA248G0735' => 'eca', 'ECA248G1053' => 'eca', 'EL10Ac5g10419' => 'bvu', 'EL10Ac5g12462' => 'bvu', 'EL10Ac7g16298' => 'bvu', 'EL10Ac9g22403' => 'bvu', 'Eucgr.B02705' => 'egr', 'Eucgr.B03816' => 'egr', 'Eucgr.D01696' => 'egr', 'Eucgr.J00569' => 'egr', 'Eucgr.J00573' => 'egr', 'Eucgr.K03061' => 'egr', 'Eucgr.K03270' => 'egr', 'FAN02G0235' => 'fan', 'FAN04G2827' => 'fan', 'FAN05G3208' => 'fan', 'FAN08G3693' => 'fan', 'FAN09G3752' => 'fan', 'FAN11G1728' => 'fan', 'FAN13G0444' => 'fan', 'FAN14G5917' => 'fan', 'FAN15G1929' => 'fan', 'FAN17G0515' => 'fan', 'FAN18G3326' => 'fan', 'FAN18G4002' => 'fan', 'FAN20G2040' => 'fan', 'FAN21G1547' => 'fan', 'FAN24G1583' => 'fan', 'FAN25G0139' => 'fan', 'FAN27G3149' => 'fan', 'FvH4_2g21810' => 'fve', 'FvH4_3g26430' => 'fve', 'FvH4_4g16070' => 'fve', 'FvH4_5g11300' => 'fve', 'FvH4_6g13090' => 'fve', 'Glyma.03G161800' => 'gma', 'Glyma.07G136600' => 'gma', 'Glyma.10G035400' => 'gma', 'Glyma.10G173500' => 'gma', 'Glyma.11G179000' => 'gma', 'Glyma.12G094500' => 'gma', 'Glyma.12G188600' => 'gma', 'Glyma.13G313000' => 'gma', 'Glyma.18G187200' => 'gma', 'Glyma.19G163300' => 'gma', 'Glyma.20G216700' => 'gma', 'Gohir.A01G221625' => 'ghi', 'Gohir.A02G097301' => 'ghi', 'Gohir.A05G078200' => 'ghi', 'Gohir.A07G211500' => 'ghi', 'Gohir.A08G060200' => 'ghi', 'Gohir.A08G060275' => 'ghi', 'Gohir.A08G110400' => 'ghi', 'Gohir.A09G099100' => 'ghi', 'Gohir.A09G153900' => 'ghi', 'Gohir.D01G210700' => 'ghi', 'Gohir.D03G086200' => 'ghi', 'Gohir.D05G081100' => 'ghi', 'Gohir.D07G217700' => 'ghi', 'Gohir.D08G069400' => 'ghi', 'Gohir.D08G123900' => 'ghi', 'Gohir.D09G098500' => 'ghi', 'Gohir.D09G149600' => 'ghi', 'Gorai.001G251900' => 'gra', 'Gorai.002G256400' => 'gra', 'Gorai.003G076000' => 'gra', 'Gorai.004G073000' => 'gra', 'Gorai.004G130500' => 'gra', 'Gorai.006G115500' => 'gra', 'Gorai.006G170800' => 'gra', 'Gorai.009G082800' => 'gra', 'GSVIVG01019626001' => 'vvi', 'GSVIVG01028300001' => 'vvi', 'GSVIVG01034110001' => 'vvi', 'GSVIVG01037572001' => 'vvi', 'HanXRQChr01g0014581' => 'han', 'HanXRQChr02g0059821' => 'han', 'HanXRQChr03g0086231' => 'han', 'HanXRQChr04g0113841' => 'han', 'HanXRQChr06g0166671' => 'han', 'HanXRQChr07g0189271' => 'han', 'HanXRQChr08g0217611' => 'han', 'HanXRQChr13g0406481' => 'han', 'HanXRQChr17g0534471' => 'han', 'Haze_09132' => 'cav', 'Haze_20845' => 'cav', 'Haze_23556' => 'cav', 'Haze_24600' => 'cav', 'Hma1.2p1_0126F.1_g059240' => 'hma', 'Hma1.2p1_0273F.1_g109880' => 'hma', 'Hma1.2p1_0440F.1_g153690' => 'hma', 'Hma1.2p1_0456F.1_g156490' => 'hma', 'Hma1.2p1_0486F.1_g163520' => 'hma', 'Hma1.2p1_0766F.1_g215200' => 'hma', 'HPP92_000733' => 'vpl', 'HPP92_004394' => 'vpl', 'HPP92_006639' => 'vpl', 'HPP92_007390' => 'vpl', 'HPP92_022333' => 'vpl', 'HPP92_022362' => 'vpl', 'Hund02905' => 'sun', 'Hund09593' => 'sun', 'Hund11360' => 'sun', 'Hund15237' => 'sun', 'Hund18795' => 'sun', 'Lalb_Chr01g0005031' => 'lal', 'Lalb_Chr02g0149661' => 'lal', 'Lalb_Chr02g0152291' => 'lal', 'Lalb_Chr03g0028391' => 'lal', 'Lalb_Chr03g0042491' => 'lal', 'Lalb_Chr06g0168641' => 'lal', 'Lalb_Chr19g0125171' => 'lal', 'Lalb_Chr19g0136281' => 'lal', 'Lalb_Chr21g0313801' => 'lal', 'Lj1A64T38' => 'lonja', 'Lj1C267T8' => 'lonja', 'Lj1g0010771' => 'lja', 'Lj1g0019667' => 'lja', 'Lj2A1154T64' => 'lonja', 'Lj2A158T89' => 'lonja', 'Lj3A964T51' => 'lonja', 'Lj3A964T52' => 'lonja', 'Lj3g0020476' => 'lja', 'Lj3g0021339' => 'lja', 'Lj5g0005546' => 'lja', 'Lj6g0026384' => 'lja', 'Lj8A202T43' => 'lonja', 'Lsat_1_v5_gn_2_35701' => 'lsa', 'Lsat_1_v5_gn_3_13540' => 'lsa', 'Lsat_1_v5_gn_5_154501' => 'lsa', 'Lsat_1_v5_gn_5_182181' => 'lsa', 'Lsat_1_v5_gn_6_82381' => 'lsa', 'Lsat_1_v5_gn_8_91220' => 'lsa', 'Manes.02G004800' => 'mes', 'Manes.04G060100' => 'mes', 'Manes.05G197450' => 'mes', 'Manes.09G095700' => 'mes', 'Manes.12G031000' => 'mes', 'Manes.13G032500' => 'mes', 'Mapoly0088s0049' => 'mpo', 'MBI04_g35985_MAGBIO' => 'mbi', 'MBI12_g20254_MAGBIO' => 'mbi', 'MBI14_g32127_MAGBIO' => 'mbi', 'MBI18_g15336_MAGBIO' => 'mbi', 'MD03G1116900' => 'mdo', 'MD03G1155700' => 'mdo', 'MD03G1155900' => 'mdo', 'MD04G1135600' => 'mdo', 'MD05G1200100' => 'mdo', 'MD06G1114400' => 'mdo', 'MD10G1186300' => 'mdo', 'MD11G1173100' => 'mdo', 'MD12G1149300' => 'mdo', 'MD14G1135600' => 'mdo', 'Medtr1g070180' => 'mtr', 'Medtr1g077640' => 'mtr', 'Medtr2g087295' => 'mtr', 'Medtr4g051565' => 'mtr', 'Medtr7g063470' => 'mtr', 'Medtr7g096650' => 'mtr', 'MELO3C009231.2' => 'cme', 'MELO3C013782.2' => 'cme', 'MELO3C015067.2' => 'cme', 'MELO3C015748.2' => 'cme', 'Migut.D00995' => 'egut', 'Migut.D02390' => 'egut', 'Migut.E00639' => 'egut', 'Migut.J00297' => 'egut', 'MSTRG.12192' => 'ama', 'MSTRG.12387' => 'ama', 'MSTRG.17682' => 'ama', 'MSTRG.18313' => 'ama', 'MSTRG.18788' => 'ama', 'MSTRG.19068' => 'ama', 'MSTRG.21013' => 'ama', 'MSTRG.5640' => 'ama', 'Nitab4.5_0000086g0130' => 'nta', 'Nitab4.5_0000158g0070' => 'nta', 'Nitab4.5_0000380g0090' => 'nta', 'Nitab4.5_0000722g0010' => 'nta', 'Nitab4.5_0001491g0090' => 'nta', 'Nitab4.5_0002611g0010' => 'nta', 'Nitab4.5_0002728g0060' => 'nta', 'Nitab4.5_0004598g0020' => 'nta', 'Nitab4.5_0005119g0020' => 'nta', 'Nitab4.5_0010113g0010' => 'nta', 'Nn1g00343' => 'nnu', 'Nn1g02715' => 'nnu', 'Nn2g11238' => 'nnu', 'Nn2g13482' => 'nnu', 'Nn2g14313' => 'nnu', 'Nn3g18916' => 'nnu', 'Nn3g19619' => 'nnu', 'Nn6g34685' => 'nnu', 'Nn7g37545' => 'nnu', 'Oeu009043.2' => 'oeu', 'Oeu010749.1' => 'oeu', 'Oeu013448.3' => 'oeu', 'Oeu022044.1' => 'oeu', 'Oeu028891.2' => 'oeu', 'Oeu029213.1' => 'oeu', 'Oeu030908.1' => 'oeu', 'Oeu039663.1' => 'oeu', 'Oeu039814.1' => 'oeu', 'Oeu048834.2' => 'oeu', 'Os01g0865600' => 'osa', 'Os02g0673500' => 'osa', 'Os07g0101300' => 'osa', 'Os11g0158500' => 'osa', 'Os12g0160400' => 'osa', 'Peaxi162Scf00074g00312' => 'pax', 'Peaxi162Scf00098g00024' => 'pax', 'Peaxi162Scf00134g00810' => 'pax', 'Peaxi162Scf00584g00012' => 'pax', 'Peaxi162Scf00624g00085' => 'pax', 'PGR031G0730' => 'pgr', 'PGR031G0787' => 'pgr', 'PGR044G1137' => 'pgr', 'PGR102G2990' => 'pgr', 'PGR119G0843' => 'pgr', 'PGSC0003DMG400005894' => 'stu', 'PGSC0003DMG400008818' => 'stu', 'PGSC0003DMG400009717' => 'stu', 'PGSC0003DMG400012248' => 'stu', 'PGSC0003DMG400013473' => 'stu', 'PGSC0003DMG400019624' => 'stu', 'Phvul.001G159600' => 'pvu', 'Phvul.005G119400' => 'pvu', 'Phvul.006G000400' => 'pvu', 'Phvul.007G194600' => 'pvu', 'Phvul.008G115700' => 'pvu', 'Phvul.011G098900' => 'pvu', 'Phvul.L006001' => 'pvu', 'Potri.001G086000' => 'ptr', 'Potri.001G216900' => 'ptr', 'Potri.002G040600' => 'ptr', 'Potri.003G144900' => 'ptr', 'Potri.005G222500' => 'ptr', 'Potri.006G090000' => 'ptr', 'Potri.009G017700' => 'ptr', 'Prupe.5G127100' => 'ppe', 'Prupe.6G144300' => 'ppe', 'Prupe.6G260900' => 'ppe', 'Prupe.8G225900' => 'ppe', 'Psat3g058560' => 'psa', 'Psat3g135360' => 'psa', 'Psat5g260680' => 'psa', 'Psat6g053800' => 'psa', 'Psat6g055680' => 'psa', 'Psat7g205560' => 'psa', 'PSO063G3015' => 'pso', 'PSO135G0358' => 'pso', 'PSO210G5021' => 'pso', 'PSO339G2018' => 'pso', 'PSO339G6023' => 'pso', 'PSO384G0929' => 'pso', 'PSO384G1747' => 'pso', 'PSO384G4985' => 'pso', 'PSO782G1128' => 'pso', 'PSO832G2923' => 'pso', 'QL01p019775' => 'qlo', 'QL02p028908' => 'qlo', 'QL07p029008' => 'qlo', 'QL07p029673' => 'qlo', 'QL09p038079' => 'qlo', 'RcHm_v2.0_Chr3g0465361' => 'rch', 'RcHm_v2.0_Chr5g0048491' => 'rch', 'RcHm_v2.0_Chr6g0288541' => 'rch', 'RcHm_v2.0_Chr7g0186541' => 'rch', 'Rhsim01G0201100' => 'rsi', 'Rhsim01G0265700' => 'rsi', 'Rhsim05G0196000' => 'rsi', 'Rhsim07G0079500' => 'rsi', 'Rhsim13G0033700' => 'rsi', 'RhsimUnG0214100' => 'rsi', 'Sabra01G0062300' => 'sbr', 'Sabra02G0032300' => 'sbr', 'Sabra03G0105400' => 'sbr', 'Sabra05G0171200' => 'sbr', 'Sabra06G0068100' => 'sbr', 'Sabra09G0010900' => 'sbr', 'Sabra16G0126900' => 'sbr', 'SalBow3G3004' => 'sbo', 'SalBow4G1106' => 'sbo', 'SalBow4G2683' => 'sbo', 'SalBow5G1373' => 'sbo', 'SalBow5G3039' => 'sbo', 'SalBow6G4065' => 'sbo', 'SalBow6G5090' => 'sbo', 'SalBow7G1919' => 'sbo', 'Sc07g0007040' => 'sci', 'Sc17g0000760' => 'sci', 'Sc21g0006800' => 'sci', 'Sc22g0004770' => 'sci', 'Sc24g0003100' => 'sci', 'Sed0001907' => 'sed', 'Sed0007530' => 'sed', 'Sed0008567' => 'sed', 'Sed0019766' => 'sed', 'Sed0021277' => 'sed', 'SEGI_04487' => 'sgi', 'SEGI_05127' => 'sgi', 'SEGI_08938' => 'sgi', 'SEGI_12083' => 'sgi', 'SEGI_17573' => 'sgi', 'SEGI_29814' => 'sgi', 'SGA_v2.0_scaffold100G29630' => 'sas', 'SGA_v2.0_scaffold127G33938' => 'sas', 'SGA_v2.0_scaffold138G35255' => 'sas', 'SGA_v2.0_scaffold174G39262' => 'sas', 'SGA_v2.0_scaffold1G00600' => 'sas', 'SGA_v2.0_scaffold228G43254' => 'sas', 'SGA_v2.0_scaffold22G09802' => 'sas', 'SGA_v2.0_scaffold268G46225' => 'sas', 'SGA_v2.0_scaffold75G24966' => 'sas', 'SGA_v2.0_scaffold85G26831' => 'sas', 'SGA_v2.0_scaffold92G28141' => 'sas', 'SHI06931' => 'shi', 'SHI10413' => 'shi', 'SHI12377' => 'shi', 'SHI12378' => 'shi', 'SMO304G0020' => 'smo', 'Solyc06g074110.3' => 'sly', 'Solyc08g082940.2' => 'sly', 'Solyc09g011170.3' => 'sly', 'Solyc09g066280.4' => 'sly', 'Solyc11g068960.2' => 'sly', 'Sopen00g006230' => 'spe', 'Sopen06g030530' => 'spe', 'Sopen06g030540' => 'spe', 'Sopen08g031160' => 'spe', 'Sopen09g005920' => 'spe', 'Sopen09g027980' => 'spe', 'Sopen11g027670' => 'spe', 'Sp2g00090' => 'spa', 'Sp4g10040' => 'spa', 'Sp4g13760' => 'spa', 'TAR365G0037' => 'tar', 'TAR365G0514' => 'tar', 'TAR375G0655' => 'tar', 'TAR623G0505' => 'tar', 'TAR633G0790' => 'tar', 'TAR636G0076' => 'tar', 'TAR636G0559' => 'tar', 'TAR636G0617' => 'tar', 'TAR636G1405' => 'tar', 'THA.LOC104800877' => 'tha', 'THA.LOC104801509' => 'tha', 'THA.LOC104809311' => 'tha', 'THA.LOC104810796' => 'tha', 'THA.LOC104815852' => 'tha', 'THA.LOC104816979' => 'tha', 'THA.LOC104817437' => 'tha', 'THA.LOC104826445' => 'tha', 'Thecc.01G261200' => 'tca', 'Thecc.03G223900' => 'tca', 'Thecc.05G033600' => 'tca', 'Thecc.09G272600' => 'tca', 'Thhalv10001928m.g' => 'esa', 'Thhalv10016331m.g' => 'esa', 'Thhalv10023398m.g' => 'esa', 'TPR.G16291' => 'tpr', 'TPR.G34349' => 'tpr', 'TPR.G3539' => 'tpr', 'TPR.G4238' => 'tpr', 'TPR.G4642' => 'tpr', 'TPR.G8881' => 'tpr', 'TWI12G0684' => 'twi', 'TWI15G0937' => 'twi', 'TWI18G1180' => 'twi', 'TWI77G0226' => 'twi', 'TWI79G0638' => 'twi', 'TWI81G0797' => 'twi', 'unitig_22.g6159' => 'ugi', 'unitig_26.g9416' => 'ugi', 'unitig_578.g15877' => 'ugi', 'unitig_749.g13605' => 'ugi', 'unitig_749.g13606' => 'ugi', 'unitig_8.g3240' => 'ugi', 'vmacro00528' => 'vma', 'vmacro00542' => 'vma', 'vmacro02650' => 'vma', 'vmacro13866' => 'vma', 'vmacro14321' => 'vma', 'vmacro14848' => 'vma', 'vmacro20184' => 'vma', 'VMungo0720G2712' => 'vmu', 'VMungo0720G2959' => 'vmu', 'VMungo1080G1059' => 'vmu', 'VMungo1127G1637' => 'vmu', 'VMungo1127G2077' => 'vmu', 'VMungo1383G3358' => 'vmu', 'VMungo1383G3615' => 'vmu', 'Zm00001eb092180' => 'zma', 'Zm00001eb139520' => 'zma', 'Zm00001eb202130' => 'zma', 'Zm00001eb250370' => 'zma', 'Zm00001eb298040' => 'zma', 'Zm00001eb407240' => 'zma', 'Zm00001eb428840' => 'zma' ) $gf_id = 'HOM05D000978' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000978' ) $data_identifier = 'HOM05D000978' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 11, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 7, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428840' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1